Early Career Researchers
The HUPO Early Career Researcher (ECR) Committee was founded in 2015 and has since actively and tirelessly promoted the transmission of HUPO ideals to the next generation of proteomic leaders, who are involved in many of the varied HUPO initiatives and activities. Mentoring represents the strongest link between generations of scientists, which is why the ECR is pleased to present a variety of awards and activities in conjunction with HUPO’s Annual World Congress.
We are excited to announce the 9th ECR Manuscript Competition at HUPO 2023 to select the “Proteomics Highlight of the Year”. The manuscript competition is a unique opportunity for early career researchers to gain visibility in the proteomics community, as it serves as a platform to highlight the important contributions that postdoctoral fellows, young clinicians, and junior faculty members make to the proteomics field. Three finalists were selected to present their manuscripts published during the 2022 and 2023 calendar years in a dedicated plenary session at HUPO2023. An expert committee will evaluate the oral presentations to determine the “Proteomics Highlight of the Year”. The first-place winner will receive a cash prize of $1,000 USD and two runner-ups will each take home $500 USD.
Session Information
Monday, September 18, 2023
5:45 PM – 6:30 PM
Plenary Hall
Chairs: Ruth Huttenhain (Stanford University, Stanford, CA, USA), Mathieu Lavallée-Adam (University of Ottawa, Ottawa, Canada)
Presentations:
Immobility-associated Thromboprotection is Conserved across Mammalian Species from Bear to Human
Johannes Bruno Müller-Reif (Max Planck Institute of Biochemistry, Munich, Germany)
Global Detection of Human Variants and Isoforms by Deep Proteome Sequencing
Pavel Sinitcyn (Morgridge Institute For Research, Madison, WI, USA)
Dissecting the Blood Ecosystem in SARS-CoV-2 Omicron Patients
Hong Wang (Institute Of Hematology & Blood Diseases Hospital, Chinese Academy Of Medical Sciences & Peking Union Medical College, Beijing, China)
This session is sponsored by:
Meet our finalists
Johannes Bruno Müller-Reif
Dr. Johannes Bruno Müller-Reif is a project leader at the Max Planck Institute of Biochemistry (MPIB). During his doctorate with Prof. Matthias Mann he focused on extending proteomics across the tree of life. Following his PhD, he joined the proteomics start-up OmicEra, where he contributed to the development and application of high-throughput proteomics methods for biomarker discovery and clinical research. Concurrently, Dr. Müller-Reif maintained a relationship with MPIB as a guest scientist, which led him to establish a research group with focus on the intersection of mass spectrometry-based proteomics and pediatrics. Dr. Müller-Reif’s research is multifaceted. A cornerstone of his work involves applying mass spectrometry-based proteomics to large patient cohorts for target and biomarker discovery. Further topics are the utilization of proteomics for the investigation of rare pediatric diseases and proteomics research of non-model organisms for evolutionary medicine.
Pavel Sinitcyn
Pavel Sinitcyn is a distinguished Morgridge Interdisciplinary Postdoctoral Fellow at UW-Madison, conducting cutting edge research in the Joshua Coon lab. With a strong background in developing software solutions for proteomics data processing, Pavel has played a pivotal role in developing tools such as MaxQuant, MaxDIA, Perseus, and Deep Proteomic Sequencing Method.
Hong Wang
Communications, PNAS, Genome Biology, and Molecular Neurodegeneration. His research interests primarily focus on two areas: 1) developing high-throughput single-cell and single-cell type proteomics technologies and 2) utilizing advanced multi-omics integrative strategies to investigate blood ecosystems in systemic diseases.
The HUPO Early Career Researcher (ECR) Initiative in collaboration with the Human Proteome Project has organized a 3-minute thesis competition where candidates will present their research within 3 minutes using one static slide and in a form that can be understood by a general audience. Twelve candidates have been pre-selected for the final competition, to be held in a parallel session at HUPO2023 and you are invited to participate. An expert committee will evaluate the presentations to determine the winner and two runner ups. The first-place winner will receive a cash prize of $300 USD and two runner-ups will each take home $100 USD. You won’t want to miss this action!
Session Information
Monday, September 18, 2023
2:30 PM – 3:35 PM
Room 201 + 202
Chairs: Andreas Hober (Astrazeneca, Sweden)
Meet our finalists
Mane Polite Roneldine Mesidor (University Of Nebraska Medical Center, Omaha, NE, USA)
Alireza Nameni (VIB-UGhent, Ghent, Belgium)
Dina Schuster (ETH Zurich, Zurich, Switzerland)
Janaina Silva (University of Sao Paulo, Sao Paulo, Brazil)
Justin Sing (University of Toronto, Toronto, Canada)
Dafni Skiadopoulou (University of Bergen, Bergen, Norway)
Xue Sun (Peking University, Beijing, China)
Di Tang (Lund University, Lund, Sweden)
Marvin Thielert (Max Planck Institute of Biochemistry, Munich, Germany)
Takehiro Tozuka (Nippon Medical School, Tokyo, Japan)
Yun-Jung Yang (Taipei Medical University, Taipei, Taiwan)
Yu Zong (Fudan University, Shanghai, China)
This session is sponsored by:
All graduate students (Master’s and PhD), as well as postdocs, were invited to participate in the HUPO2023 poster competition. Fifteen finalists in each trainee category (students and postdocs) have been pre-selected based on the quality, novelty, and potential impact of submitted abstracts for the next phase of the competition. The finalists will be visited by evaluators during the poster sessions at HUPO 2022 to ultimately select a winner ($200 USD cash prize) and two runner-ups ($100 USD cash prize) for each category (students and postdocs).
Meet our finalists
Students
- Iryna Abramchuk (University Of Ottawa, Ottawa, Canada)
PP01.44: Novel machine learning algorithm for real-time optimization of mass spectrometry-based proteomics data acquisition to improve protein-protein interaction detection sensitivity. - Praneeta Bhavsar (National Centre For Cell Science, Pune, India)
PP05.39: Investigation of Potential Chemoresistant Breast Cancer Targets by Proteomics and Phosphoproteomics Approaches. - Weronika Buczek (University of Sheffield, Sheffield, UK)
PP01.175: Proximity labelling proteomics to study α7 nicotinic ACh receptor and its role in Alzheimer’s disease. - Kyoung-Min Choi (Chungnam National University, Daejeon, South Korea)
PP05.47: Activity-Based Protein Profiling and Global Proteome Analysis Reveal MASTL-NEDD4-1 axis Promotes Gastric Cancer Tumorigenesis. - Hae-seul Choi (Cha University, Pocheon-si, Gyeonggi-do, South Korea)
PP05.108: Pro-apoptosis protein Bax is regulated by deubiquitinating enzymes. - Senuri De Silva (Agency for Science, Technology and Research (A*STAR), Singapore)
PP01.101: A Pioneering Deep Proteomics Data Analytics Pipeline: Illuminating a New Functional Breast Cancer Subtype. - Amy George (Newcastle University, UK)
PP01.138: Understanding the Molecular Effects of Trilaciclib, a CDK4/6 Inhibitor, in the Treatment of FLT3-mutated Acute Leukaemia: Insights from Proteomic Analysis. - Jherico Geronca (Kyoto University, Kyoto, Japan)
PP03.03: Mass Spectrogram Decomposition of DIA Proteomics Datasets for Identification and Quantitation of Peptides and Proteins. - Eunji Jeon (Seoul National University Hospital, Seoul, South Korea)
PP03.77: Plasma Proteome Profiling for Discriminating Major Depressive Disorder and Bipolar Disorder by Data Independent Acquisition Mass Spectrometry - Daqian Lu (The Hong Kong Polytechnic University, Hong Kong)
PP01.116: Comparison of Guinea Pig Retinal Proteomes Prepared Using S-TrapTM and EasyPepTM Protocols for Label-Free Proteomics - Zhalaliddin Makhammajanov (Nazarbayev University School of Medicine, Astana, Kazakhstan)
PP03.94: Candidate Protein Biomarkers Associated with Glomerular Filtration Rate in Chronic Kidney Disease: a Proteomics Cohort Study. - Mane Polite Roneldine Mesidor (University Of Nebraska Medical Center, Omaha, NE, USA)
PP01.165: nanoCSC reveals novel insight into the surfaceome of primary human cardiomyocytes in heart failure. - Manh Quan Nguyen (Taipei Medical University, Taipei, Taiwan)
PP03.142: Proteomic mechanisms underlying lung injury in aging rat model exposed to fine particular matter air pollution. - Shuijing Pan (Binzhou Medical University, Yantai, China)
PP01.83: The Combination of Quantitative Proteomics And Systems Genetics Analysis Reveals PTN is Associated With Sleep Loss Induced Cognitive Impairment. - Polina Shnaider (Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia)
PP01.12: The Involvement of Exosomes in Intercellular Communication During Chemotherapy-Induced Chemoresistance in Ovarian Cancer Cells.
Postdocs
- Lucy Goudswaard (University Of Bristol, Bristol, UK)
PP03.71: Characterizing the effect of adiposity on cardiometabolic traits and the circulating proteome in Qatar biobank - Hsiang-en Hsu (Academia Sinica, Taipei, Taiwan)
PP03.74: Proteomic landscape reveals potential protein signature independent of Helicobacter pylori infection in Gastric Cancer - Byung Soo Kang (Centre For Eye And Vision Research (CEVR), Hong Kong)
PP03.80: Avian Model of Experimental Keratoconus: A Preliminary Proteomic Analysis of Corneal Limbus in Chicks - Gurjeet Kaur (Steno Diabetic Center Copenhagen, Denmark)
PP01.163: Deep phenotyping of serum proteome in search for early-stage biomarker of diabetes neuropathy using micro-flow LC–MS/MS - DongGeun Lee (St. Jude Children’s Research Hospital, Memphis, TN, USA)
PP01.51:Comprehensive Profiling of Human Brain Protein Complexes Using Co-fractionation Mass Spectrometry - Sutpirat Moonmuang (Chiang Mai University, Thailand)
PP05.74: Proteomic analysis of the function of IMPDH2 in osteosarcoma metastasis - Liujia Qian (Westlake University, Hangzhou, China)
PP05.82: Integrative proteomic characterization of epithelial ovarian cancer - Carolin Sailer (University Of Copenhagen, Copenhagen, Denmark)
PP03.26: Towards deciphering the molecular signature particular for peripartum cardiomyopathy through a data-driven multi-omics strategy - Elena Smertina (The Commonwealth Scientific and Industrial Research Organisation (CSIRO), Canberra, Australia)
PP03.144:Crosslinking Mass Spectrometry for Rabbit Calicivirus Receptor Identification - Minsoo Son (Washington University School of Medicine, Saint Louis, MO, USA)
PP03.114: Investigating the Role of Proteins in Regulating Breast Density in Premenopausal Breast Cancer Patients - Yaoting Sun (Westlake University, Hangzhou, China)
PP01.168: A protein-based prognostic prediction model to stratify pediatric patients with papillary thyroid carcinoma - Xuan-Tung Trinh (University of Southern Denmark, Odense, Denmark)
PP03.12. Data mining antibody sequences for database searching in proteomics data - Silvia Valentinuzzi (University Of G. D’annunzio Chieti, Italy)
PP05.97: Characterization of lymphocytes protein cargo in Covid-19: unveiling the impaired coagulation - Tim Van Den Bossche (VIB – Ghent University, Ghent, Belgium)
PP03.171: Accounting for chimeric spectra boosts the number of identifications in metaproteomics without impacting sensitivity
Sponsored by Molecular Omics:
Last year the HUPO Early Career Researcher (ECR) Committee launched a new award to recognize rising stars and leaders in the field of proteomics. This career achievement award is designed to recognize early career trainees who have had an exceptional impact on the proteomics field and community. This impact can take the shape of publications, patents obtained, development of a commercial product, establishment of a course, training program, workshop or any other contributions or service to the field of proteomics.
Meet our Rising Star
Nicholas Riley (University of Washington, Seattle, WA, USA)
Nick is an incoming assistant professor at the University of Washington. His lab will focus on systems glycobiology enabled by innovations in mass spectrometry and chemical biology. He completed his graduate research at the University of Wisconsin-Madison with Prof. Josh Coon in 2018, and did postdoctoral research at Stanford University with Nobel Laureate Prof. Carolyn Bertozzi.
Three exciting mentoring sessions will be hosted by the HUPO ECR Committee during HUPO 2023 World Congress. These will provide a forum for mentors and mentees to discuss topics relevant to several areas of building a career.
Mentoring Session 1 – AI Tools in Grant Writing Applications, Research Articles, CVs
Sunday, September 17, 2023, 4:00 PM – 5:00 PM
Room 201 + 202
Chairs: Emily Hashimoto-Roth (University of Toronto, Toronto, Canada) and Ruth Huttenhain (Stanford University, Stanford, CA, USA)
Speakers:
- Dr. Laura Elo (University Of Turku, Turku, Finland)
- Dr. Min-sik Kim (Dgist, Daegu, South Korea)
- Dr. Jack Washington (Molecular Omics)
Mentoring Session 2 – Promoting Your Science
Tuesday, September 19, 2023, 2:30 PM – 3:35 PM
Room 201 + 202
Chairs: Daniel Garama (Hudson Institute of Medical Research, Australia) and Mathieu Lavallée-Adam (University of Ottawa, Canada)
Speakers:
- Dr. Alexey Nesvizhskii (University Of Michigan, Ann Arbor, MI, USA)
- Dr. Hyun Woo Park (Yonsei University, Seoul, South Korea)
- Dr. Stephen Pennington (UCD, Dublin, Ireland)
- Paula Burton (Mass Dynamics, Australia)
Mentoring Session 3 – Geographical Differences for Academic (Postdoc-PI) Job Applications (Asia, Europe, Africa, Americas)
Wednesday, September 20, 2023, 2:30 PM – 3:35 PM
Room 201 + 202
Chairs: Andreas Hober (Astrazeneca, Sweden) and Livia Rosa-Fernandes (Macquarie University Centre for Motor Neuron Disease Research, Sydney, Australia)
Speakers:
- Dr. Nicolle Packer (Macquarie University, Australia)
- Dr. Uwe Völker (University Greifswald, Germany)
- Dr. Yu-Ju Chen (Academia Sinica, Taipei, Taiwan)
Dr. Birgit Schilling (Buck Institute, Novato, CA, USA)
Monday, September 18, 2023
7:30 PM – 9:30 PM
Museum 1
The ECR Networking Night is an entertaining evening for early career researchers from all over the world to meet and mingle. This event will be a fantastic opportunity for early career researchers to network with peers and mentors from all over the world. And senior researchers, you may just find the next superstar to hire! And the venue MUSEUM1 is just amazing! Don’t miss out, book your ticket now.
Visit the HUPO ECR Booth in the Exhibit Hall at the HUPO 2023 World Congress
Keep an eye out for our logo and drop by our booth at the HUPO 2023 World Congress in Busan! This will be a great opportunity to learn about our initiatives, congress activities – or joining our group – we’d love to meet and chat with you!
We are excited to announce the 9th ECR Manuscript Competition at HUPO 2023 to select the “Proteomics Highlight of the Year”. The manuscript competition is a unique opportunity for early career researchers to gain visibility in the proteomics community, as it serves as a platform to highlight the important contributions that postdoctoral fellows, young clinicians, and junior faculty members make to the proteomics field.
HUPO encourages early career proteomics researchers to participate in this competition with an already published or accepted manuscript during the 2022 and 2023 calendar years. 3 finalists will be selected to present their publications in a dedicated plenary session at HUPO 2023, where an expert committee will evaluate the oral presentations to determine the “Proteomics Highlight of the Year”. Awards along with cash prizes ($1000 to winner, $500/each to two runners up) will be presented during the Closing Ceremony & Awards Session at HUPO 2023. In addition, the three finalists will receive complimentary registration for HUPO 2023 (registration will be refunded post congress). Application deadline is April 15, 2023.
Eligibility criteria: Competition is intended for postdoctoral fellows (Ph.D. degree awarded post January 2017), junior faculty members (appointment post January 2019 and PhD awarded post January 2011) and young clinicians (M.D. degree awarded post January 2016). Applicants must be HUPO members.
Publication Criteria: The applicant must have significantly contributed to the publication as a first or last (or shared first/last) author. The publication must be an original research article. Review articles will not be considered for this competition. The publication must have been accepted or printed for publication at the time of submission for the competition, but must not have been published before January 1, 2022. Manuscripts that were posted on bioRxiv and other preprint servers prior to submission will be considered.
How to Apply: A complete application needs to include the documents listed below. Send completed applications by email to ecr@hupo.org before April 15, 2023.
- Single publication file as a pdf (including the supplementary information, if it applies):
- The manuscript must be an original research article and the applicant must have contributed significantly to the concept and/or experimental work and/or data analysis (first, co-first, corresponding or co-corresponding author).
- The publication must have been accepted and/or printed for publication at the time of submission to the competition, but not earlier than January 1, 2022.
- The publication must be in English.
- A short statement (300 words maximum) in which the applicant describes the novelty and impact of the publication on the field of proteomics.
Selection Process: The HUPO ECR Committee and a panel of ad-hoc expert scientists will score the publications and select three finalists based on the following criteria:
1. The scientific content and novelty of the work.
2. The impact of the work and its applications in the field of proteomics.
The three finalists will be selected and notified by June 15, 2023. The finalists will be asked to provide a short biosketch and headshot picture after receiving their notifications.
This session is sponsored by:
The HUPO Early Career Researcher (ECR) Committee in collaboration with the Human Proteome Project (HPP) has organized a 3-minute thesis competition where candidates will present their research within 3 minutes using one static slide and in a form that can be understood by a general audience. 12 candidates will be pre-selected based on a submitted lay abstract for the final competition, to be held in a dedicated parallel session at HUPO 2023 and you are invited to participate. An expert committee will evaluate the presentations to determine the winner and two runners up. The winner will receive a cash prize of $300 USD and two runners up will each take home $100 USD. You won’t want to miss this action!
Eligibility Criteria: Open to Ph.D. students who have not defended at the time of application. Applicants must be HUPO members.
How to Apply: Applicants should submit a lay abstract through the HUPO 2023 abstract submission portal without scientific jargons that describes their research for a general, non-expert audience. Abstract text should not exceed 300 words.
Selection Process: Candidates will be selected as finalists based on effective communication of their research topic in the lay abstract and the novelty and potential impact of their work. The 12 selected finalists will be notified by June 22, 2022 and will be asked to provide a short biosketch and headshot picture after receiving their notifications. Selected candidates are required to also submit an abstract for oral or poster presentation for HUPO 2023. The live presentations will be judged on the same criteria by a panel of judges in the dedicated parallel session at HUPO 2023.
Cancellation and refund policies are according to the rules of each hotel.
All dates are based on Korean standard time (GMT+9 hours).
For accommodation inquiries, please contact info_edge@cuttingedge.or.kr
The HUPO Early Career Researcher (ECR) Committee invites all graduate students (Master and PhD) and postdocs to participate in the poster competition at HUPO 2023 in Busan to win awards and cash prizes. To participate, graduate students and postdocs only need to indicate during the abstract submission whether they would like to participate in the competition.
15 posters in each trainee category (graduate students and postdocs) will be pre-selected based on the quality, novelty and potential impact of submitted abstracts. Posters will be visited by evaluators during the poster sessions at HUPO 2023 to select a winner and runner up for each level (graduate student and postdocs). Award winners will be highlighted during the HUPO 2023 Closing Ceremony & Awards Session.
Eligibility criteria: All graduate students (Master and PhD) and postdocs can apply for the competition upon abstract submission for HUPO 2023. Applicants must be HUPO members.
How to Apply: During the abstract submission for HUPO 2023, Master’s students, PhD students, and postdocs must indicate if they want to also participate in the poster competition.
Selection criteria: 15 posters in each trainee category (graduate students and postdocs) will be pre-selected based on the quality, novelty and potential impact of submitted abstracts. Posters will be visited by evaluators during the poster sessions at HUPO 2023 to select a winner and two runner ups for each level (graduate student and postdocs).
Notification: Presenters of selected posters will be notified prior to the conference that their poster will be evaluated during HUPO 2023.
Prize: $200 for the winner and $100 for the runners up both at the graduate student and postdoc level.
Sponsored by Molecular Omics:
Last year the HUPO Early Career Researcher (ECR) Committee launched a new award to recognize rising stars and leaders in the field of proteomics. This career achievement award is designed to recognize early career trainees who have had an exceptional impact on the proteomics field and community. This impact can take the shape of publications, patents obtained, development of a commercial product, establishment of a course, training program, workshop or any other contributions or service to the field of proteomics. The winner of the award will give a short presentation during the closing ceremony of HUPO 2023 and take home a cash prize of $500.
Nominations are open to all HUPO members who have accumulated at most 5 years after their Ph.D. defense, by the application deadline. Ph.D. career interruptions and leaves, such as parental leaves, will be taken into account to extend the eligibility period. Candidates can self-nominate or be nominated, by a supervisor, a colleague, a superior, a client, a collaborator, etc. The person nominating the candidate can be anybody that has been positively impacted or has witnessed the positive impact of the nominee.
Eligibility criteria: Open to HUPO members who have accumulated at most 5 years after their Ph.D. defense, by the application deadline. Ph.D. Career interruptions and leaves, such as parental leaves, will be taken into account to extend the eligibility period.
Nomination Process: Candidates can self-nominate or be nominated, by a supervisor, a colleague, a superior, a client, a collaborator, etc. The person nominating the candidate can be anybody that has been positively impacted or has witnessed the positive impact of the nominee.
Application Package: A 1-page nomination letter, the nominee’s CV, and a short text describing the nominee’s most significant contributions (400 words maximum).
Selection Criteria: Award is given based on the overall career achievements of the nominee, whether those are publications, patents obtained, development of a commercial product, establishment of a course, training program, or workshop. 60% of the score is based on the impact of the nominee on the field or community and the other 40% on the originality and breadth of the contributions to the field or community.
Prize: Cash Prize of $500. The award will be given in the HUPO 2023 closing ceremony and accompanied by a short talk. The winner will be asked to provide a short biosketch and a headshot photograph for publication and advertising purposes.
Three exciting mentoring sessions will be hosted by the HUPO ECR Committee during HUPO 2023 World Congress. These will provide a forum for mentors and mentees to discuss topics relevant to several areas of building a career. Stay tuned for more information!
The ECR Networking Night is an entertaining evening for early career researchers from all over the world to meet and mingle. This event will be a fantastic opportunity for early career researchers to network with peers and mentors from all over the world. And senior researchers, you may just find the next superstar to hire! Stay tuned for more information!
Visit the HUPO ECR Booth in the Exhibit Hall at the HUPO 2023 World Congress
Keep an eye out for our logo and drop by our booth at the HUPO 2023 World Congress in Busan! This will be a great opportunity to learn about our initiatives, congress activities – or joining our group – we’d love to meet and chat with you!